HsaEX6064328 @ hg38
Exon Skipping
Gene
ENSG00000130653 | PNPLA7
Description
patatin like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr9:137461536-137462274:-
Coord C1 exon
chr9:137462199-137462274
Coord A exon
chr9:137461931-137462041
Coord C2 exon
chr9:137461536-137461620
Length
111 bp
Sequences
Splice sites
3' ss Seq
GGCCCTGGGGGTGTGCACAGGAA
3' ss Score
3.77
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CTGGAGGTGGTGAAGAGCAGTGACTACTGCGAGTACCTGCGCCCCCCCATCGACAGCTACAGCACCCTGGACTTCG
Seq A exon
GAAGTGGGCTACCAGCACGGGCGCACGGTGTTTGACATCTGGGGCCGCAGCGGCGTGCTGGAGAAGATGCTCCGCGACCAGCAGGGGCCGAGCAAGAAGCCCGCGAGTGCG
Seq C2 exon
GTCCTCACCTGTCCCAACGCCTCCTTCACGGACCTTGCCGAAATTGTGTCTCGCATTGAGCCCGCCAAGCCCGCCATGGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130653_MULTIEX2-11/14=10-12
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.126 C2=0.138
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGTGAAGAGCAGTGACT
R:
ATCCACCATGGCGGGCTT
Band lengths:
156-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains