DreEX6010754 @ danRer10
Exon Skipping
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24543043-24543756:-
Coord C1 exon
chr5:24543604-24543756
Coord A exon
chr5:24543408-24543524
Coord C2 exon
chr5:24543043-24543124
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTATATTTTTGTTATTGTAGGAC
3' ss Score
8.26
5' ss Seq
AATGTAACT
5' ss Score
5.91
Exon sequences
Seq C1 exon
GTGTTGAACATGGCAGAGATTCAGACCCGCCTGGCGTATGTGTGTTCTGTGCGTCAGCTTGAGCTGGTCAAAGACAGTGATTACTGCGAGTACCTGCGACCGCCCATAGATCGCTATGGCACTTTGGACTTTGGCAAATTTGATGAGATTGCT
Seq A exon
GACGTTGGTTTCCAGCATGGGAAGACCGTGTTTGATGTGTGGTGTCGGAGTGGAGTGCGAGAAACGATAATGAAGGACCAGCATCAAGAGGAATTCCACAAATCCAGGAGCACCAAT
Seq C2 exon
GCGACATGTCCAAATGCTTCTTTCACTGATCTGGCAGAAATAGTATCCCGGATAGAGCCAGTTAAGCAGGCCGTTGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002-'40-45,'40-44,41-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.359 C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGAACATGGCAGAGATTCAGA
R:
CATCCACAACGGCCTGCTTAA
Band lengths:
234-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]