RnoEX0067747 @ rn6
Exon Skipping
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2259805-2260408:+
Coord C1 exon
chr3:2259805-2259957
Coord A exon
chr3:2260097-2260203
Coord C2 exon
chr3:2260324-2260408
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCTGCACACAGGAAGTTG
3' ss Score
-5.09
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GTGTTGAACATGGCAGAGATTCAGACACGACTGGCCTATGTATGCTGCGTCCGGCAGCTGGAGATGGTGAAGAACAGCGACTACTGTGAGTACCTGAGGCCTCCCATCGACAGCTACCGAACCCTGGACTTCGGCAAGTTTGATGAGATCTGT
Seq A exon
TTGGGTATCAACATGGGCGGACAGTATTTGACATCTGGGTCCGGAGCGGGGTCCTAGAGAAGATGTTGCAGGACCAGCAGGGGACAAGCAAGAGGAAGGACTGTGGG
Seq C2 exon
GTGTTCACCTGTCCCAATTCCTCCTTCACGGACCTCGCTGAGATTGTGTCACGGATTGAGCCAGCCAAAGTGGCTGCAGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190-'47-56,'47-55,48-56
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACATGGCAGAGATTCAGACA
R:
CATCCACTGCAGCCACTTTGG
Band lengths:
234-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]