GgaEX6014810 @ galGal4
Exon Skipping
Gene
ENSGALG00000008736 | PNPLA7
Description
patatin-like phospholipase domain-containing protein 7 [Source:RefSeq peptide;Acc:NP_001124214]
Coordinates
chr17:1686878-1694537:+
Coord C1 exon
chr17:1686878-1687030
Coord A exon
chr17:1689658-1689768
Coord C2 exon
chr17:1694453-1694537
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGATTCTGTTTTTCTTGCAGGAA
3' ss Score
12.27
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTGCCGAACATGGCAGAGATCCAAACACGGCTCGCGTACGTGTGCTGCGTGCGGCAGCTGGAGATGGTGAAGAGCAGCGACTACTGCGAGTACATCCGGCCACCCATCGACCGCTACGGCACGCTGGATTTTGGGAAGTTTGATGAGATCTGT
Seq A exon
GAAGTGGGATATCAACATGGGAAGACTGTGTTTGGTGTCTGGTCCAGGAGCGGCGTCCTTGACAAGATGCTACGAGACAGACAAGAGACACACAAAACCAAAACTTCTGAT
Seq C2 exon
AACGTGACCTATCCCAGCACCTCCTTCACAGACCTGGCAGAAATCGTGTCCAGGATCGAGCCAGTGAAAGCTGCCGTGGCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736-'55-54,'55-52,57-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.324 C2=0.241
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAACATGGCAGAGATCCAA
R:
ATCAGCCACGGCAGCTTTC
Band lengths:
234-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]