MmuEX0036068 @ mm10
Exon Skipping
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:25052032-25052637:+
Coord C1 exon
chr2:25052032-25052184
Coord A exon
chr2:25052308-25052418
Coord C2 exon
chr2:25052553-25052637
Length
111 bp
Sequences
Splice sites
3' ss Seq
GGGGCCTCCTATGTACACAGGAA
3' ss Score
5.95
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GTGTTGAACATGGCAGAGATTCAGACTCGACTGGCCTATGTGTGCTGCGTCCGGCAGCTGGAGATGGTGAAGAACAGCGACTACTGTGAGTACCTGAGGCCTCCCATCGACAGTTACCGCACCCTGGACTTCGGCAAATTTGATGAGATCTGT
Seq A exon
GAAGTTGGGTATCAACATGGGCGGACAGTGTTTGACATCTGGGTCCGGAGTGGTGTCCTAGAGAAGATGTTGCAGGACCAGCAGGGGACAAGCAAGAGGAAGGACTGTGGG
Seq C2 exon
GTGTTCACCTGCCCCAATTCCTCCTTCACGGACCTTGCTGAGATTGTGTCACGGATTGAGCCGGCCAAGGTGGCTGCAGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACATGGCAGAGATTCAGACT
R:
CATCCACTGCAGCCACCTTG
Band lengths:
234-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types