BtaEX6047500 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012121 | NOXA1
Description
Bos taurus NADPH oxidase activator 1 (NOXA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102075]
Coordinates
chr11:105707074-105709255:-
Coord C1 exon
chr11:105709173-105709255
Coord A exon
chr11:105708237-105708345
Coord C2 exon
chr11:105707074-105707208
Length
109 bp
Sequences
Splice sites
3' ss Seq
GGCTCCCCTACTGCCCACAGGTT
3' ss Score
7.96
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCATTTGACCAGGCGGTGACCAAGGATGCCTGCTTGGCTGTCGGCTTCCTCCAGCGCGGAGTGGCCAACTTCCAGCTGGAGAG
Seq A exon
GTTCATGGAGGCCCTGTCCGACTTTCAGCGCACCCTGGCCCAGCTGAGGGACAACACCGCCATCGACTACACCCAGCTGGGCCTGCGGTTCAAGCTGCAAGCCTGGGAG
Seq C2 exon
GTGCTGTTCAACATGGCTGCGGTGCAGAGCCAGCTGGGGCTCTGGGCAGAGGCTGCCTGCAGCCTGGGGGACGCCATCTCCAAGGGGCCGGAAGGGGCCCGCAACGGCCTGGACGTCGCCCTGGGCCAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012121-'3-6,'3-4,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(45.8=100)
A:
PF134141=TPR_11=PD(28.8=45.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGCGGTGACCAAGG
R:
CTTCCGGCCCCTTGGAGAT
Band lengths:
170-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]