GgaEX6014733 @ galGal4
Exon Skipping
Gene
ENSGALG00000008952 | noxa1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BWX5]
Coordinates
chr17:904093-907825:+
Coord C1 exon
chr17:904093-904175
Coord A exon
chr17:905533-905641
Coord C2 exon
chr17:907691-907825
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTGTCATTTCTGCATTGCAGGTA
3' ss Score
10.64
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCATTTGATGAAACAGTTATGAAGGACAACTCTCTCGCTGTCGGCTACTTTCAGAGAGGGTTTGTTTGCCTGCAGTTGGAAAT
Seq A exon
GTATGAAGAAGCTCTCTCTGACTATCATATGGCCTTCAGTCATCTAAGAAAAAATCCCTTCATCGATTACAAGCAGCTGGGGCTGAGGCACATTCTCTATGCATGGGAG
Seq C2 exon
GTGCTGTACAGCACTGCTGCCACGCAGTGCCGGCTGCAGCAGTGGCAGGAGGCCAGAGACACCCTAGAGAAGGCCGTCGTGTGGAGACCTGAAGGAAGATCAGCAACACTGGCCCTGGCCCTTGAGCGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008952-'3-2,'3-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(38.0=100)
A:
PF134141=TPR_11=PD(26.8=51.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGATGAAACAGTTATGAAGGA
R:
CTGCACTCGCTCAAGGGC
Band lengths:
218-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]