MmuEX6099407 @ mm9
Exon Skipping
Gene
ENSMUSG00000036805 | Noxa1
Description
NADPH oxidase activator 1 [Source:MGI Symbol;Acc:MGI:2449980]
Coordinates
chr2:24946012-24948144:-
Coord C1 exon
chr2:24948062-24948144
Coord A exon
chr2:24947241-24947349
Coord C2 exon
chr2:24946012-24946146
Length
109 bp
Sequences
Splice sites
3' ss Seq
GAGACCCCTGATGCCCACAGGTT
3' ss Score
5.53
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCATTTGACCAAGCAGTGACTAAGGACACCTGCATGGCTGTTGGCTTCCTCCAGCGGGGAGTGGCCAATTTCCAGCTGCAGAG
Seq A exon
GTTCCAGGAGGCTGTGTCTGACTTCCAGTTGGCCCTGGCACAGCTGAGGGACAATGCTGTCATTGACTACACACAACTGGGTCTGAACTTCAAATTGCAAGCCTGGGAG
Seq C2 exon
GTCCTATACAACATGGCATCAGCACAGTGCCAGGCAGGGCTCTGGACCAAGGCTGCCAATACTCTAGTGGAGGCAATCTCCAAATGGCCAGAGGGGGCTCAAGACATCCTGGACATTGCCATGGACAAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036805-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(38.6=100)
A:
PF134141=TPR_11=PD(22.9=43.2)
C2:
PF131761=TPR_7=WD(100=75.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGACCAAGCAGTGACT
R:
CTGCACTTTGTCCATGGCAATG
Band lengths:
218-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: