DreEX0051178 @ danRer10
Exon Skipping
Gene
ENSDARG00000056047 | noxa1
Description
NADPH oxidase activator 1 [Source:ZFIN;Acc:ZDB-GENE-050913-32]
Coordinates
chr5:28543177-28549534:-
Coord C1 exon
chr5:28549452-28549534
Coord A exon
chr5:28549136-28549244
Coord C2 exon
chr5:28543177-28543311
Length
109 bp
Sequences
Splice sites
3' ss Seq
GTCATTTTTTCTAATGCCAGGCT
3' ss Score
5.01
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GCTCTCGACCGAGTAATCGCCAAGGACTCATGCCTTGCTGTGGGATTTTTTCAGCGGTCTGCCGTTCATATGATGGCAAACAG
Seq A exon
GCTTGAGGAGGCATTGTCTGATTGTATTTGGGCTCAGAAATACATGAGGGAAAACCCTGTCATTGACTACAAGCAGCTGGGTCTTCGCTATAAACTCTACAGCTGGCAG
Seq C2 exon
GTGCTTTATAATGCAGCAGCCGTTCACTCTAGACTGCAACAATGGGACAAAGCTAGGGACATTTTGCTGGCGGCCTCACAGGAGAGAGGAGCAGGCCGGAGCAACCTGATAGACACGGCCCTAGAGGCTATTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056047-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(38.0=100)
A:
PF134141=TPR_11=PD(26.8=51.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCGACCGAGTAATCGC
R:
CCTCTAGGGCCGTGTCTATCA
Band lengths:
210-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]