RnoEX6015790 @ rn6
Exon Skipping
Gene
ENSRNOG00000009286 | Noxa1
Description
NADPH oxidase activator 1 [Source:RGD Symbol;Acc:1306687]
Coordinates
chr3:2304493-2306875:-
Coord C1 exon
chr3:2306793-2306875
Coord A exon
chr3:2306002-2306110
Coord C2 exon
chr3:2304493-2304627
Length
109 bp
Sequences
Splice sites
3' ss Seq
GAGAGCCCTGATGCCCACAGGCT
3' ss Score
4.11
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCATTTGACCAAGCAGTGACCAAGGACACCTGCATGGCTGTTGGCTTCCTCCAGCGGGGAGTGGCCAATTTCCAGCTGCAGAG
Seq A exon
GCTCCAGGAGGCTGTGTCCGACTTCCAGTTGGCCCTGGCACAGCTGAGGGGCAATGCTGCCATTGACTACACACAACTGGGTCTGGACTTCAAACTGCAAGCCTGGGAG
Seq C2 exon
GTCCTATATAACATGGCATCAGTGCAGTGCCAGGCAGGGCTCTGGACCAAGGCTGCCAATACTCTAGTAGAAGCAATCTCCAAACGGCCAGAGGGGGCCCAAGACACCCTGGAGGCTGCCATGGACAAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009286-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.144
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(39.7=100)
A:
PF134141=TPR_11=PD(23.5=43.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGACCAAGCAGTGACC
R:
CTGCACTTTGTCCATGGCAGC
Band lengths:
218-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]