MmuEX6099407 @ mm10
Exon Skipping
Gene
ENSMUSG00000036805 | Noxa1
Description
NADPH oxidase activator 1 [Source:MGI Symbol;Acc:MGI:2449980]
Coordinates
chr2:25090492-25092624:-
Coord C1 exon
chr2:25092542-25092624
Coord A exon
chr2:25091721-25091829
Coord C2 exon
chr2:25090492-25090626
Length
109 bp
Sequences
Splice sites
3' ss Seq
GAGACCCCTGATGCCCACAGGTT
3' ss Score
5.53
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCATTTGACCAAGCAGTGACTAAGGACACCTGCATGGCTGTTGGCTTCCTCCAGCGGGGAGTGGCCAATTTCCAGCTGCAGAG
Seq A exon
GTTCCAGGAGGCTGTGTCTGACTTCCAGTTGGCCCTGGCACAGCTGAGGGACAATGCTGTCATTGACTACACACAACTGGGTCTGAACTTCAAATTGCAAGCCTGGGAG
Seq C2 exon
GTCCTATACAACATGGCATCAGCACAGTGCCAGGCAGGGCTCTGGACCAAGGCTGCCAATACTCTAGTGGAGGCAATCTCCAAATGGCCAGAGGGGGCTCAAGACATCCTGGACATTGCCATGGACAAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036805-'6-5,'6-3,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(38.6=100)
A:
PF134141=TPR_11=PD(22.9=43.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGACCAAGCAGTGACT
R:
CTGCACTTTGTCCATGGCAATG
Band lengths:
218-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types