HsaEX6064293 @ hg38
Exon Skipping
Gene
ENSG00000188747 | NOXA1
Description
NADPH oxidase activator 1 [Source:HGNC Symbol;Acc:HGNC:10668]
Coordinates
chr9:137426248-137429016:+
Coord C1 exon
chr9:137426248-137426330
Coord A exon
chr9:137428033-137428141
Coord C2 exon
chr9:137428882-137429016
Length
109 bp
Sequences
Splice sites
3' ss Seq
GGGACCCCGGCTGCCCACAGGTT
3' ss Score
5.99
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCATTTGACCAAGCCGTGACCAAGGACACCTGCATGGCGGTTGGCTTCTTCCAGCGAGGAGTGGCCAACTTCCAGCTGGCAAG
Seq A exon
GTTCCAGGAGGCTCTGTCTGACTTCTGGCTGGCCCTGGAGCAGCTGAGGGGCCACGCTGCCATCGACTACACGCAGCTGGGCCTGCGGTTCAAGCTGCAAGCCTGGGAG
Seq C2 exon
GTGCTACACAATGTGGCGTCGGCACAGTGCCAGCTGGGGCTCTGGACAGAGGCGGCCAGCAGCCTAAGGGAGGCCATGTCCAAGTGGCCGGAGGGGTCCCTGAATGGCCTGGACTCAGCCCTGGACCAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188747-'3-11,'3-8,4-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(39.7=100)
A:
PF134141=TPR_11=PD(23.5=43.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGACCAAGCCGTGAC
R:
CTGCACTTGGTCCAGGGCT
Band lengths:
218-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains