BtaEX6047562 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047202 | GRIN1
Description
glutamate receptor, ionotropic, N-methyl D-aspartate 1 [Source:HGNC Symbol;Acc:HGNC:4584]
Coordinates
chr11:105929156-105929863:-
Coord C1 exon
chr11:105929722-105929863
Coord A exon
chr11:105929505-105929632
Coord C2 exon
chr11:105929156-105929320
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTCCCGCCCCCACTCGCCAGCGC
3' ss Score
5.05
5' ss Seq
CGGGTAGGA
5' ss Score
7.22
Exon sequences
Seq C1 exon
ATCGTGACGATCCACCAGGAGCCCTTCGTGTATGTCAAGCCTACGCTGAGCGACGGCACGTGCAAGGAGGAGTTCACCGTCAACGGGGACCCGGTCAAGAAGGTGATCTGCACCGGGCCCAATGACACGTCGCCGGGCAGCC
Seq A exon
CGCGCCACACGGTGCCTCAGTGCTGCTACGGCTTCTGCGTCGATCTGCTCATCAAGCTGGCGCGGACCATGAACTTCACGTACGAAGTTCACCTGGTGGCCGATGGCAAGTTCGGCACTCAGGAGCGG
Seq C2 exon
GTGAACAACAGCAATAAGAAGGAGTGGAACGGGATGATGGGCGAGCTGCTCAGCGGGCAGGCGGACATGATCGTGGCCCCGCTGACCATCAACAACGAGCGCGCGCAGTACATCGAGTTCTCGAAGCCCTTCAAGTACCAGGGCCTGACCATTCTGGTCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047202-'12-11,'12-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.047 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
PF0049715=SBP_bac_3=PU(10.9=83.7)
C2:
PF0049715=SBP_bac_3=FE(16.3=100),PF0006021=Lig_chan=PU(4.3=21.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCCCTTCGTGTATGTCA
R:
GAGAACTCGATGTACTGCGCG
Band lengths:
248-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]