MmuEX6099466 @ mm9
Exon Skipping
Gene
ENSMUSG00000026959 | Grin1
Description
glutamate receptor, ionotropic, NMDA1 (zeta 1) [Source:MGI Symbol;Acc:MGI:95819]
Coordinates
chr2:25153308-25154055:-
Coord C1 exon
chr2:25153914-25154055
Coord A exon
chr2:25153706-25153833
Coord C2 exon
chr2:25153308-25153472
Length
128 bp
Sequences
Splice sites
3' ss Seq
TATTCCCTAACTGCTCACAGCAC
3' ss Score
4.69
5' ss Seq
CGGGTATGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
ATAGTGACAATCCACCAAGAACCCTTCGTGTATGTCAAGCCCACAATGAGTGATGGCACATGCAAAGAGGAGTTCACAGTCAATGGTGACCCTGTCAAGAAGGTGATCTGTACGGGGCCTAATGACACATCCCCAGGAAGCC
Seq A exon
CACGTCACACAGTGCCCCAGTGCTGTTATGGCTTCTGCGTTGACCTGCTCATCAAGCTGGCACGGACCATGAATTTTACCTACGAGGTGCACCTTGTGGCAGATGGCAAGTTTGGCACACAGGAGCGG
Seq C2 exon
GTAAACAACAGCAACAAAAAGGAGTGGAACGGAATGATGGGAGAGCTGCTCAGTGGTCAAGCAGACATGATCGTGGCTCCACTGACCATTAACAATGAGCGTGCGCAGTACATAGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGACCATTCTGGTCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026959-'15-14,'15-12,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.023 C2=0.073
Domain overlap (PFAM):
C1:
NO
A:
PF0049715=SBP_bac_3=PU(10.2=81.4)
C2:
PF0049715=SBP_bac_3=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACATGCAAAGAGGAGTT
R:
AATGGTCAGGCCCTGGTACTT
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: