DreEX0036193 @ danRer10
Exon Skipping
Gene
ENSDARG00000025728 | grin1b
Description
glutamate receptor, ionotropic, N-methyl D-aspartate 1b [Source:ZFIN;Acc:ZDB-GENE-051202-2]
Coordinates
chr5:29027899-29028606:-
Coord C1 exon
chr5:29028471-29028606
Coord A exon
chr5:29028253-29028380
Coord C2 exon
chr5:29027899-29028063
Length
128 bp
Sequences
Splice sites
3' ss Seq
ACTGGCTTGTATAAATACAGGTC
3' ss Score
5.48
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
ATTGTAACAATTCATCAAGAGCCCTTTGTCTACGTGAAGCCGACTTTACGAGATGGAACCTGTAAGGAAGAGCACACTGTAAATGGAGTCAAAATCAAAAAAGTGATCTGCACCGGCCCAAACGAGACCATTCCAG
Seq A exon
GTCGCCCCATAGTGCCTCAGTGCTGCTATGGGTTCTGCATTGACCTTTTGATCAAACTTGCATTCACAATGAACTTCACCTATGAAGTGCATCTTGTGGCTGATGGCAAATTTGGCACTCAGGAGCGT
Seq C2 exon
GTAAATAACAGCAACAAGAAAGAGTGGAATGGCATGATGGGAGAGCTTCTGAGTGGCCTGGCAGACATGATCGTGGCTCCACTTACAATCAACAATGAACGAGCCCAGTACATAGAGTTCTCTAAACCGTTCAAATACCAGGGGCTCACAATACTTGTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025728-'12-15,'12-10,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.055
Domain overlap (PFAM):
C1:
NO
A:
PF0049715=SBP_bac_3=PU(10.0=79.1)
C2:
PF0049715=SBP_bac_3=FE(15.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGACTTTACGAGATGGAACC
R:
GAGCCCCTGGTATTTGAACGG
Band lengths:
245-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]