RnoEX0039997 @ rn6
Exon Skipping
Gene
ENSRNOG00000011726 | Grin1
Description
glutamate ionotropic receptor NMDA type subunit 1 [Source:RGD Symbol;Acc:2736]
Coordinates
chr3:2514266-2515027:-
Coord C1 exon
chr3:2514886-2515027
Coord A exon
chr3:2514676-2514803
Coord C2 exon
chr3:2514266-2514430
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCCTAACTGCCCACCCACAGCAC
3' ss Score
6.43
5' ss Seq
CGGGTATGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
ATAGTGACAATCCACCAAGAGCCCTTCGTGTACGTCAAGCCCACAATGAGTGATGGGACATGCAAAGAGGAGTTCACAGTCAATGGTGACCCAGTGAAGAAGGTGATCTGTACGGGGCCTAATGACACGTCCCCAGGCAGCC
Seq A exon
CACGCCACACAGTGCCCCAGTGCTGCTATGGCTTCTGCATAGACCTGCTCATCAAGCTGGCGCGGACCATGAATTTTACCTATGAGGTGCACCTGGTGGCAGATGGCAAGTTTGGCACACAGGAGCGG
Seq C2 exon
GTAAACAACAGCAACAAAAAGGAGTGGAACGGAATGATGGGCGAGCTACTCAGTGGCCAAGCGGACATGATTGTGGCACCACTGACCATCAACAATGAGCGTGCGCAGTACATAGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGACCATTTTGGTCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011726-'17-21,'17-19,20-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.023 C2=0.073
Domain overlap (PFAM):
C1:
NO
A:
PF0049715=SBP_bac_3=PU(10.2=81.4)
C2:
PF0049715=SBP_bac_3=FE(15.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCTTCGTGTACGTCAAG
R:
AACTCTATGTACTGCGCACGC
Band lengths:
243-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]