GgaEX6014746 @ galGal4
Exon Skipping
Gene
ENSGALG00000008898 | GRIN1
Description
glutamate [Source:RefSeq peptide;Acc:NP_996862]
Coordinates
chr17:1016645-1017501:-
Coord C1 exon
chr17:1017366-1017501
Coord A exon
chr17:1016946-1017073
Coord C2 exon
chr17:1016645-1016809
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCATTTTCTCTTGCCCACAGGCC
3' ss Score
12.47
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATCGTAACAATTCATCAAGAGCCCTTTGTGTATGTGAAGCCCACGCAAGCAGATGGGACGTGCAGGGAGGAATTCACCATCAATGGTGACCCTGTCAAAAAGGTCTTTTGCACAGGGCCCAACGAGACCATCCCAG
Seq A exon
GCCGGCCCACTGTGGCACTGTGTTGCTATGGTTTCTGCATCGACCTGCTCATCCGCCTGGCTGGTGTGATGAACTTCACCTATGAGGTTCACCTGGTGGCTGATGGTAAATTTGGTACCCAAGAGCGG
Seq C2 exon
GTGAACAACAGCAACAAGAAGGAGTGGAATGGGATGATGGGGGAGCTGCTGAGTGGCCAGGCGGATATGATTGTGGCTCCCCTCACCATCAACAATGAGCGGGCACAGTACATCGAGTTCTCCAAGCCCTTCAAGTACCAGGGTCTCACCATCCTTGTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008898-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.055
Domain overlap (PFAM):
C1:
NO
A:
PF0049715=SBP_bac_3=PU(9.7=76.7)
C2:
PF0049715=SBP_bac_3=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTTTGTGTATGTGAAGCC
R:
TGAAGGGCTTGGAGAACTCGA
Band lengths:
250-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]