BtaEX6047755 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047998 | COL5A1
Description
collagen, type V, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2209]
Coordinates
chr11:106918669-106919455:-
Coord C1 exon
chr11:106919411-106919455
Coord A exon
chr11:106918930-106918983
Coord C2 exon
chr11:106918669-106918713
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTGTGTTTCCTGTAGGGT
3' ss Score
11.43
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTGTGACGGGAATGGATGGTCAACCAGGCCCAAAAGGCAACGTG
Seq A exon
GGTCCCCAGGGAGAGCCCGGCCCCCCGGGGCAGCAGGGCAACCCAGGTGCCCAG
Seq C2 exon
GGTCTTCCGGGCCCCCAGGGCGCTATCGGGCCTCCAGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047998-'28-33,'28-32,29-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGACGGGAATGGATGGTC
R:
TTTCTCCTGGAGGCCCGATAG
Band lengths:
87-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]