RnoEX0023375 @ rn6
Exon Skipping
Gene
ENSRNOG00000008749 | Col5a1
Description
collagen type V alpha 1 chain [Source:RGD Symbol;Acc:70920]
Coordinates
chr3:6518532-6519292:+
Coord C1 exon
chr3:6518532-6518576
Coord A exon
chr3:6519095-6519148
Coord C2 exon
chr3:6519248-6519292
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCCTTTGTCTCTGTTTGTAGGGT
3' ss Score
11.27
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGTGTGACGGGTATGGATGGCCAGCCTGGCCCCAAAGGAAATGTG
Seq A exon
GGTCCCCAGGGAGAGCCTGGGCCCCCAGGACAGCAGGGTAATCCTGGTGCCCAG
Seq C2 exon
GGTCTTCCCGGTCCCCAGGGTGCCATTGGTCCTCCAGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008749-'42-30,'42-29,43-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(15.2=100),PF0139113=Collagen=PU(2.6=13.3)
A:
PF0139113=Collagen=FE(18.5=100),PF0139113=Collagen=FE(22.1=100)
C2:
PF0139113=Collagen=PD(7.6=46.7),PF0139113=Collagen=FE(18.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGACGGGTATGGATGGC
R:
TTCTCCTGGAGGACCAATGGC
Band lengths:
86-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]