MmuEX0012312 @ mm9
Exon Skipping
Gene
ENSMUSG00000026837 | Col5a1
Description
collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]
Coordinates
chr2:27829388-27830257:+
Coord C1 exon
chr2:27829388-27829432
Coord A exon
chr2:27829964-27830017
Coord C2 exon
chr2:27830213-27830257
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTTTGCCTCTGTTTTTCTAGGGT
3' ss Score
11.45
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGTGTAACGGGTATGGATGGCCAGCCTGGCCCAAAAGGAAATGTG
Seq A exon
GGTCCCCAGGGAGAGCCTGGGCCGCCAGGACAGCAGGGTAATCCTGGTGCCCAG
Seq C2 exon
GGTCTTCCAGGTCCCCAGGGTGCCATTGGTCCTCCAGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026837-'22-23,'22-22,23-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(14.4=100)
A:
PF0139113=Collagen=FE(17.5=100)
C2:
PF0139113=Collagen=PD(6.2=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAACGGGTATGGATGGCC
R:
TTCTCCTGGAGGACCAATGGC
Band lengths:
86-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: