GgaEX6015382 @ galGal4
Exon Skipping
Gene
ENSGALG00000002546 | COL5A1
Description
collagen alpha-1(V) chain precursor [Source:RefSeq peptide;Acc:NP_990121]
Coordinates
chr17:7519021-7519790:+
Coord C1 exon
chr17:7519021-7519061
Coord A exon
chr17:7519115-7519168
Coord C2 exon
chr17:7519746-7519790
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTGCCGTTGCCTCCTCACAGGGT
3' ss Score
10.18
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCTCAGGATGCTGTGAGAGGGCTGGTGCCAGGCAGGGCCTG
Seq A exon
GGTCCCCAGGGTGAGCCGGGACCCCCAGGCCAGCAGGGCAACCCAGGTGCTCAG
Seq C2 exon
GGTCTTCCAGGTCCACAAGGCCCCATCGGTCCCCCAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'31-23,'31-22,32-23=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(14.5=71.4),PF0139113=Collagen=PU(19.1=92.9)
A:
PF0139113=Collagen=FE(25.0=100)
C2:
PF0139113=Collagen=FE(20.6=100),PF0139113=Collagen=PU(8.3=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGATGCTGTGAGAGGGC
R:
CGATGGGGCCTTGTGGAC
Band lengths:
68-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]