GgaEX6015382 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8200301-8201489:+
Coord C1 exon
chr17:8200301-8200345
Coord A exon
chr17:8200814-8200867
Coord C2 exon
chr17:8201445-8201489
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTGCCGTTGCCTCCTCACAGGGT
3' ss Score
10.18
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGTGTGGCCGGTATGGATGGACAAACTGGTCCCAAGGGGAACGTG
Seq A exon
GGTCCCCAGGGTGAGCCGGGACCCCCAGGCCAGCAGGGCAACCCAGGTGCTCAG
Seq C2 exon
GGTCTTCCAGGTCCACAAGGCCCCATCGGTCCCCCAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'28-30,'28-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(14.4=100),PF0139113=Collagen=PU(7.5=46.7)
A:
PF0139113=Collagen=FE(17.5=100),PF0139113=Collagen=FE(18.3=100)
C2:
PF0139113=Collagen=FE(20.6=100),PF0139113=Collagen=PU(8.3=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGGCCGGTATGGATG
R:
GACCGATGGGGCCTTGTG
Band lengths:
76-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]