BtaEX6048506 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008817 | LAMA4
Description
Bos taurus laminin, alpha 4 (LAMA4), mRNA. [Source:RefSeq mRNA;Acc:NM_001205965]
Coordinates
chr9:38730866-38739678:+
Coord C1 exon
chr9:38730866-38731059
Coord A exon
chr9:38735923-38736039
Coord C2 exon
chr9:38739530-38739678
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTTGCTTTTCCTCCTGCAGAAA
3' ss Score
12.22
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TGCTGAGCCAGGCTGAGAGCTGGCAGAGGCAGTACAATGACACTCGCTCTCTGTTTCCTGTGGTCCTGGAGCAGCTGGACGACTATAACGCCAAGCTGTCAGACCTCCAGGAATCACTCGACCAGGCCCTTAACCATGTCAGGGATGCTGAAGACATGAACAGAGCCACAGCAGCCAGGCAGCGGGACCACGAG
Seq A exon
AAACAGCATGAGAGAGTAAGGGAACAGACGGAAGGGGTGAACGCGTCTCTGAGGACGTCTTCCAACTCACTGATGATGCCACGACTGACCCTGTCAGAACTTGATAGCATAATAAAG
Seq C2 exon
AATGCATCAGGGATTTATGCCGAAATAGATGGAGCCAAAAATGAACTTCAAAGAAAACTATCCAACCTGAGCAACCTCAGTCATGATTTAGTTCAGGAAGCTGTTGACCATGCACGGAACCTTCAGCAAGAGGCTGATGAGTTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008817-'25-17,'25-16,26-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.508 A=0.538 C2=0.540
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=FE(24.3=100)
A:
PF060089=Laminin_I=PD(14.1=94.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGACGACTATAACGCC
R:
GAAGGTTCCGTGCATGGTCAA
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]