MmuEX0026052 @ mm10
Exon Skipping
Gene
ENSMUSG00000019846 | Lama4
Description
laminin, alpha 4 [Source:MGI Symbol;Acc:MGI:109321]
Coordinates
chr10:39047934-39056925:+
Coord C1 exon
chr10:39047934-39048127
Coord A exon
chr10:39053741-39053857
Coord C2 exon
chr10:39056777-39056925
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTCCTTCCATCAGAAA
3' ss Score
9.54
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TGCTGAGCCAAGCTGAGAACTGGCAGCGGCTGCACAATGACACCCGCTCTTTATTCCCCGTGGTGCTGGAGCAGCTGGACGACTACAACGCTAAGCTGTCCGACCTCCAGGAATCCATTAACCAGGCCCTCGACCATGTCAGGGATGCAGAAGACATGAATAGAGCCATCACTTTCAAGCAGCGGGACCATGAG
Seq A exon
AAACAACATGAGAGAGTGAAGGAACAGATGGAAGTTGTGGGTGCCTCTCTGAGTATGTCTGCAGACTCTCTTACCATACCTCAGCTCACTCTTGAGGAACTTGATGAGATAATAAAG
Seq C2 exon
AATGCATCTGGAATTTATGCAGAAATAGATGGAGCCAAAAATGAGCTGCAAGGAAAACTATCCAACCTGAGTAACCTCAGTCATGACTTGGTTCAGGAAGCTACGGACCATGCATACAATCTTCAACAGGAAGCCGATGAGCTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019846-'18-14,'18-12,19-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.333 C2=0.380
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=FE(24.3=100)
A:
PF060089=Laminin_I=PD(14.1=94.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCCAAGCTGAGAACTGG
R:
TGCAGCTCATTTTTGGCTCCA
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types