DreEX6043398 @ danRer10
Exon Skipping
Gene
ENSDARG00000020785 | lama4
Description
laminin, alpha 4 [Source:ZFIN;Acc:ZDB-GENE-040724-213]
Coordinates
chr20:242840-245043:+
Coord C1 exon
chr20:242840-243033
Coord A exon
chr20:244443-244559
Coord C2 exon
chr20:244895-245043
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACATTTTCCCCTTTCTCCAGGCA
3' ss Score
10.68
5' ss Seq
ACGGTAATG
5' ss Score
6.53
Exon sequences
Seq C1 exon
TGCTCAGACGGGTGCGCAGCTTTGACAGAAATCTGATGACTACACAGGGCCGTCTGCCACCTATGCAGGAAGTTCTGGGTCGGTTTACTTCTAAACTCCTTCAAGCTCAGGATCTCCTTAGCAAAGCTGAAGACGCACTGAAACAGGCCATCAACAAATACAAGAGCAACCAGCTCAAACTACAGAGGAGAGAG
Seq A exon
GCACAGCAGCAACGTCTGAAAGACATCCAGGACGGCGTCGATCAAACAATTGTTAATGCTGCGGCAGTTCTCTCTGAGGCAAATCACACTGTTCTTGAGGTGGAAGATGTGATCACG
Seq C2 exon
AATGTGAGAGAACAGCATGCAGAAATTGACGGAGCCCGTGTCTTACTGGAGAGAAGGACAGAGAAGATATCTCAGTCAGACAGAGAACTAGTTCTGCGAGCCGAGGATCATGCCGATCAACTGCAGAGACACGCTGAAGAGCTGCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020785-'13-19,'13-18,14-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.128 C2=0.360
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=FE(24.2=100)
A:
PF060089=Laminin_I=PD(14.0=94.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCACCTATGCAGGAAGT
R:
CGGCTCGCAGAACTAGTTCTC
Band lengths:
245-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]