GgaEX1032816 @ galGal3
Exon Skipping
Gene
ENSGALG00000015001 | LAMA4
Description
NA
Coordinates
chr3:68395312-68399685:+
Coord C1 exon
chr3:68395312-68395505
Coord A exon
chr3:68397359-68397475
Coord C2 exon
chr3:68399537-68399685
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTGGTTGATTTGTTCTGTAGAAA
3' ss Score
6.12
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
TGTTACAGCGAGTTGAAGAGTTTCATGAGAGGTACAATGACACCAGATCTCTGTTTTCTGATGTGGTGGAGCAGCTCAGTGAACACAATATGAAGCTGTCAGACCTGGAGGAGGCATTAGGCCAGGCCCTTGACTATGTTATACAAACAGAGGCAATAAATAAGGAAAACACAGCCAATCTTCAAGAGCATGAG
Seq A exon
AAACAACATGAGAAATTAAAAGAGCAAGCAGATGAAGTGAACAGTATTGTGCTAAGTGCCACAGCTATTCTGGCAGAACCACAAAAGATCAGCTCAGAGTTAAGTGAGGTAATAAAG
Seq C2 exon
AATGTGTCAGGGTTCTACGCAGAAATAGATGGAGCAAAAAAGGAATTGCAAGAAAAAATAGCCAATCTGTCTCTGTTTGATGATGAGCTGGAAGAAAAGGCTATGCAGCATGCACATAACCTAAGAAGACTTGCTGATGAGTTGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015001-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=0.231 C2=0.100
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=FE(24.0=100),PF0413610=Sec34=FE(59.3=100)
A:
PF060089=Laminin_I=PD(13.9=94.9),PF0413610=Sec34=PD(13.0=35.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGTCAGACCTGGAGGA
R:
CGGTCCAACTCATCAGCAAGT
Band lengths:
252-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]