HsaEX1019344 @ hg38
Exon Skipping
Gene
ENSG00000112769 | LAMA4
Description
laminin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6484]
Coordinates
chr6:112158732-112172804:-
Coord C1 exon
chr6:112172611-112172804
Coord A exon
chr6:112165160-112165276
Coord C2 exon
chr6:112158732-112158880
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTACTCTTCCTTCCCGCAGAAA
3' ss Score
12.45
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TACTGAGCCAGGCTGAGAGCTGGCAGCGGCTGCACAATGAGACCCGCACTCTGTTTCCTGTCGTCCTGGAGCAGCTGGATGACTACAATGCTAAGTTGTCAGATCTCCAGGAAGCACTTGACCAGGCCCTTAACTATGTCAGGGATGCCGAAGACATGAACAGGGCCACAGCAGCCAGGCAGCGGGACCATGAG
Seq A exon
AAACAACAGGAAAGAGTGAGGGAACAAATGGAAGTGGTGAACATGTCTCTGAGCACATCTGCGGACTCTCTGACAACACCTCGTCTAACTCTTTCAGAACTTGATGATATAATAAAG
Seq C2 exon
AATGCGTCAGGGATTTATGCAGAAATAGATGGAGCCAAAAGTGAACTACAAGTAAAACTATCTAACCTAAGTAACCTCAGCCATGATTTAGTCCAAGAAGCTATTGACCATGCACAGGACCTTCAACAAGAAGCTAATGAATTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112769-'49-51,'49-48,52-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=0.412 C2=0.339
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=FE(24.2=100)
A:
PF060089=Laminin_I=PD(14.0=94.9)
C2:
PF101234=Mu-like_Pro=PU(53.3=96.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCAGCTGGATGACTACA
R:
GTTGAAGGTCCTGTGCATGGT
Band lengths:
255-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains