GgaEX1032816 @ galGal4
Exon Skipping
Gene
ENSGALG00000015001 | LAMA4
Description
laminin, alpha 4 [Source:HGNC Symbol;Acc:HGNC:6484]
Coordinates
chr3:65177071-65181444:+
Coord C1 exon
chr3:65177071-65177264
Coord A exon
chr3:65179118-65179234
Coord C2 exon
chr3:65181296-65181444
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTGGTTGATTTGTTCTGTAGAAA
3' ss Score
6.12
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
TGTTACAGCGAGTTGAAGAGTTTCATGAGAGGTACAATGACACCAGATCTCTGTTTTCTGATGTGGTGGAGCAGCTCAGTGAACACAATATGAAGCTGTCAGACCTGGAGGAGGCATTAGGCCAGGCCCTTGACTATGTTATACAAACAGAGGCAATAAATAAGGAAAACACAGCCAATCTTCAAGAGCATGAG
Seq A exon
AAACAACATGAGAAATTAAAAGAGCAAGCAGATGAAGTGAACAGTATTGTGCTAAGTGCCACAGCTATTCTGGCAGAACCACAAAAGATCAGCTCAGAGTTAAGTGAGGTAATAAAG
Seq C2 exon
AATGTGTCAGGGTTCTACGCAGAAATAGATGGAGCAAAAAAGGAATTGCAAGAAAAAATAGCCAATCTGTCTCTGTTTGATGATGAGCTGGAAGAAAAGGCTATGCAGCATGCACATAACCTAAGAAGACTTGCTGATGAGTTGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015001-'19-15,'19-14,21-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=0.231 C2=0.100
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=FE(24.2=100),PF0413610=Sec34=FE(62.7=100)
A:
PF060089=Laminin_I=PD(14.0=94.9),PF0413610=Sec34=PD(12.7=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGTCAGACCTGGAGGA
R:
CGGTCCAACTCATCAGCAAGT
Band lengths:
252-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]