RnoEX6062858 @ rn6
Exon Skipping
Gene
ENSRNOG00000000599 | Lama4
Description
laminin subunit alpha 4 [Source:RGD Symbol;Acc:1560062]
Coordinates
chr20:44138237-44149558:+
Coord C1 exon
chr20:44138237-44138430
Coord A exon
chr20:44145217-44145333
Coord C2 exon
chr20:44149410-44149558
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCGATTTCCTTCTAGAAA
3' ss Score
9.15
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TGCTGAGCCAAGCTGAGAACTGGCAGAGACTGCACAACGACACCCGCTCTTTACTCCCTGTGGTGTTGGAGCAGCTGGATGACTACAATGCTAAGCTGTCAGACCTCCAGGAATCCATTAACCAGGCCCTTGACCATGTCAGGGATGCAGAAGACATGAACAGAGCCATCACCTCGAAGCAGCGGGACCATGAG
Seq A exon
AAACAACACGAGAGAGTGAAGGAACAGATGGAGGCCGTGGGCACCTCTCTGAGTTTGTCTGCAGACTCTCTCATCACACCTCGGCTCACTCTTGAGGAACTTGATGAGATAATAAAG
Seq C2 exon
AATGCATCTGGAATTTATGCAGAGATAGATGGAGCCAAAAACGAACTACAGGGGAAACTGTCCAACCTGAGTAACCTCAGTCATGATTTGGTCCAAGAAGCTGTGGACCACGCGTACAACCTCCAACAGGAAGCCAACGAGCTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000599-'14-17,'14-15,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.333 C2=0.280
Domain overlap (PFAM):
C1:
PF134761=AAA_23=PD(22.5=72.3),PF060089=Laminin_I=FE(28.1=100)
A:
PF060089=Laminin_I=PD(14.1=94.9)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000000737fB7754
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCTGAGAACTGGCAGAG
R:
TCAGGTTGGACAGTTTCCCCT
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]