BtaEX6051107 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12737817-12739579:-
Coord C1 exon
chr10:12739451-12739579
Coord A exon
chr10:12738835-12738963
Coord C2 exon
chr10:12737817-12737945
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCCACCCTGTTTCTCTCCAGGCT
3' ss Score
10.61
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
CTTGCCCACCTGGGTTCTGGGGCCCCGCCTGCTTCCACACATGCAGCTGCCACAACGGGGCGAGCTGCAGCGCCGAGGATGGGGCCTGCCACTGCACCCCTGGTTGGACCGGACTCTTCTGCACGCAGC
Seq A exon
GCTGCCCAGCAGCGTTTTATGGGAAGGACTGCGGGCGTGTGTGCCAGTGTCAGAACGGCGCCAGCTGTGACCACATCAGCGGCAAGTGCACCTGCCGCACAGGCTTTACCGGGGAACACTGTGAGCAGA
Seq C2 exon
GATGCGCCCCAGGAACCTTTGGCTATGGGTGTCAGCAGCTATGCGAATGCATGAACAATGCCACCTGTGACCACGTCACTGGCACCTGTTATTGCAGCTCTGGATTCAAAGGGATCCGGTGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140-'13-16,'13-15,14-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(28.6=27.3)
A:
PF0005319=Laminin_EGF=PU(70.2=75.0)
C2:
PF0005319=Laminin_EGF=PD(27.7=29.5),PF0005319=Laminin_EGF=PU(78.4=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGGTTCTGGGGCC
R:
TTGGTCACACCGGATCCCTTT
Band lengths:
251-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]