RnoEX6036175 @ rn6
Exon Skipping
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:70169462-70170649:+
Coord C1 exon
chr8:70169462-70169590
Coord A exon
chr8:70170034-70170162
Coord C2 exon
chr8:70170521-70170649
Length
129 bp
Sequences
Splice sites
3' ss Seq
GACCTGTGGTCTTGTTGCAGGTT
3' ss Score
9.4
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
CCTGCCCATCTGGGTTCTGGGGCTCTGCCTGCTTCCACACATGCAGCTGCCACAACGGGGCGAGCTGCAGCGCCGAGGATGGGGCCTGCCACTGCACCCCTGGCTGGACCGGACTCTTCTGCACGCAGC
Seq A exon
GTTGCCCTGCAGCATTTTTTGGGAAGGATTGTGGGCACATATGCCAGTGTCAGAATGGAGCCAGCTGTGACCACATCACTGGGAAATGCACCTGTCGAACAGGCTTCTCTGGGCGCCACTGTGAACAGA
Seq C2 exon
GATGTGCCCCTGGAACCTTTGGATACGGGTGTCAGCAGCTATGTGAGTGCATGAACAATGCCACTTGTGACCATGTCACTGGTACCTGTTACTGCAGCCCGGGATTCAAAGGAATCAGGTGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634-'26-32,'26-31,27-32=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(30.2=29.5)
A:
PF0005319=Laminin_EGF=PU(67.4=65.9)
C2:
PF0005319=Laminin_EGF=PD(30.2=29.5),PF0005319=Laminin_EGF=PU(82.9=65.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGGTTCTGGGGCTCTG
R:
TGGTCACACCTGATTCCTTTGA
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]