GgaEX1035870 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:20349663-20353134:-
Coord C1 exon
chr10:20353006-20353134
Coord A exon
chr10:20352160-20352288
Coord C2 exon
chr10:20349663-20349791
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTTACTCTCCTTCCTGAAAGGTT
3' ss Score
9.04
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTTGCCCCCCAGGTTTTTGGGGCACGGATTGCTTTCATTCATGCAACTGCCACAATGGAGCAATGTGCAGCCCTTACGATGGAGAATGCAGATGTACTCATGGTTGGACTGGGCTCTACTGCACACAGC
Seq A exon
GTTGCCCAGCTGCTTTCTATGGAAAAAACTGTGCCAACGTCTGTCAGTGTCAGAACGGAGCGGACTGTGACCACATCACTGGGCAGTGCACGTGCAGGACGGGATTCACAGGCAAACAGTGCGAGCAAA
Seq C2 exon
AGTGCTCACCAGGAACATTTGGTTATGGTTGCAAACAACTCTGTGAGTGCATGAATAATGCCACATGTGACCATGTCACAGGTACTTGCTACTGCAGTCCGGGCTTCAAAGGAATCAGATGTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631-'11-13,'11-12,12-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(30.2=29.5)
A:
PF0005319=Laminin_EGF=PU(69.0=65.9)
C2:
PF0005319=Laminin_EGF=PD(28.6=27.3),PF0005319=Laminin_EGF=PU(78.4=65.9),PF0200911=Rifin_STEVOR=PU(4.9=6.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTTTTGGGGCACGGATT
R:
ACATCTGATTCCTTTGAAGCCCG
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]