GgaEX1035870 @ galGal4
Exon Skipping
Gene
ENSGALG00000007631 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:17688409-17691880:-
Coord C1 exon
chr10:17691752-17691880
Coord A exon
chr10:17690906-17691034
Coord C2 exon
chr10:17688409-17688537
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTTACTCTCCTTCCTGAAAGGTT
3' ss Score
9.04
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTTGCCCCCCAGGTTTTTGGGGCACGGATTGCTTTCATTCATGCAACTGCCACAATGGAGCAATGTGCAGCCCTTACGATGGAGAATGCAGATGTACTCATGGTTGGACTGGGCTCTACTGCACACAGC
Seq A exon
GTTGCCCAGCTGCTTTCTATGGAAAAAACTGTGCCAACGTCTGTCAGTGTCAGAACGGAGCGGACTGTGACCACATCACTGGGCAGTGCACGTGCAGGACGGGATTCACAGGCAAACAGTGCGAGCAAA
Seq C2 exon
AGTGCTCACCAGGAACATTTGGTTATGGTTGCAAACAACTCTGTGAGTGCATGAATAATGCCACATGTGACCATGTCACAGGTACTTGCTACTGCAGTCCGGGCTTCAAAGGAATCAGATGTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631_MULTIEX1-6/13=5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(30.2=29.5)
A:
PF0005319=Laminin_EGF=PU(69.0=65.9)
C2:
PF0005319=Laminin_EGF=PD(28.6=27.3),PF0005319=Laminin_EGF=PU(78.4=65.9),PF0200911=Rifin_STEVOR=PU(4.9=6.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTTTTGGGGCACGGATT
R:
ACATCTGATTCCTTTGAAGCCCG
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]