MmuEX6066636 @ mm10
Exon Skipping
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64691221-64692483:+
Coord C1 exon
chr9:64691221-64691349
Coord A exon
chr9:64691795-64691923
Coord C2 exon
chr9:64692355-64692483
Length
129 bp
Sequences
Splice sites
3' ss Seq
GACCTGTGGTCTTGTTGCAGGTT
3' ss Score
9.4
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
CCTGCCCATCTGGGTTCTGGGGCTCTGCCTGCTTCCACACATGCAGCTGCCACAACGGGGCGAGCTGCAGCGCCGAGGATGGGGCCTGCCACTGCACCCCTGGCTGGACTGGACTCTTCTGCACGCAGC
Seq A exon
GTTGCCCTTCAGCATTTTTTGGGAAGGACTGTGGGCACATATGCCAGTGTCAGAATGGAGCCAGCTGTGACCACATCACTGGGAAATGCACCTGTCGAACAGGCTTCTCTGGCCGCCACTGTGAACAGA
Seq C2 exon
GATGTGCCCCTGGAACCTTTGGATATGGGTGTCAGCAGCTATGTGAGTGCATGAACAATGCCACTTGTGACCACGTCACTGGTACCTGTTACTGTAGCCCGGGATTCAAAGGAATCAGGTGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466-'27-34,'27-29,31-34=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PD(27.1=30.2),PF0005319=Laminin_EGF=PU(60.9=65.1)
C2:
PF0005319=Laminin_EGF=PD(30.2=29.5),PF0005319=Laminin_EGF=PU(82.9=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGGTTCTGGGGCTCTG
R:
TGGTCACACCTGATTCCTTTGA
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types