BtaEX6051309 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011644 | THSD4
Description
thrombospondin type-1 domain-containing protein 4 precursor [Source:RefSeq peptide;Acc:NP_001071498]
Coordinates
chr10:18571335-18579859:+
Coord C1 exon
chr10:18571335-18571510
Coord A exon
chr10:18573886-18573982
Coord C2 exon
chr10:18579584-18579859
Length
97 bp
Sequences
Splice sites
3' ss Seq
ATTGACCTCTGTGTTGTCAGATG
3' ss Score
6.39
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CCTTGCGAAGTCGTTCTGGCCGCTCCATCATCAATGGGAACTGGGCAATTGACCGGCCTGGAAAATACGAGGGCGGAGGGACCATGTTCACATACAAGCGTCCAAATGAGATTTCGAGCACTGCTGGAGAGTCCTTTTTGGCCGAAGGTCCCACTAATGAGATCTTGGATGTTTAT
Seq A exon
ATGATACACCAGCAGCCTAACCCAGGAGTCCATTATGAGTACGTGATCATGGGGAACAACGCCATCAGCCCACAGGTGCCACCTCACAGGAGACCAG
Seq C2 exon
GGGAGCCCTTCAATGGCCAGCTGGTACCAGAAGGGAGGAGCCAGCAGGAGGGAAAAGAGAAAGAGGGGGACCAGGAGAAGGCAGACGAGCGCGGTGGGGCACCTGAAATGTTCACGTTGGAATCAGCACAGACCTTCCCGGTCAGGCAGCCAGACAGATTCTCTCTCCACCGGCCGGACAGCGTGGTGCCACCAGCTCCACAGCCCCCTCGGCAGAGCCGGGATCACAACTGGAAGCAGCTGGGGACCACAGAGTGCTCGACAACCTGCGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011644-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.335 A=0.569 C2=0.839
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.6=100)
A:
PF059869=ADAM_spacer1=PD(13.7=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGAGAGTCCTTTTTGGC
R:
TGAACATTTCAGGTGCCCCAC
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]