MmuEX6066474 @ mm9
Exon Skipping
Gene
ENSMUSG00000032289 | Thsd4
Description
thrombospondin, type I, domain containing 4 [Source:MGI Symbol;Acc:MGI:2672033]
Coordinates
chr9:59844813-59850833:-
Coord C1 exon
chr9:59850658-59850833
Coord A exon
chr9:59847748-59847844
Coord C2 exon
chr9:59844813-59845088
Length
97 bp
Sequences
Splice sites
3' ss Seq
CATAGACTTTGTGTCCTCAGATG
3' ss Score
8.15
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CCTTGCGAAGTCGCTCTGGCCGCTCCATCATCAATGGGAACTGGGCAATCGATCGCCCGGGGAAGTACGAGGGCGGAGGGACAATGTTCACCTACAAACGACCGAACGAGGTCTCCAGCACTGCGGGGGAGTCCTTTCTGGCTGAGGGTCCCACTAATGAGATCCTGGATGTCTAT
Seq A exon
ATGATACACCAGCAGCCCAACCCAGGAGTCCACTATGAGTACGTGATCATGAGGAATAATGCCATCAGCCCACAGGTGCCACCACACAGGAGACCAG
Seq C2 exon
GAGAACCTTTCAATGGGCAGCTGGAAGAGGAAGACAGAGGCCAGGAGGACAGAGAAGAGAGGGAGAAGAACCAGGAAAAGGAAGACTCACAAGTCGAGGCCCCTGAGGTATTCACGTCAGAATCCACGCAGACCTTCCCAGTCAGGCATCCGGAGAGATTCCCTTCCCACCGACCAGACAACTTGGTGCCCCCAGCACCACAGCCCCCAAGGCGAAGCCGGGACCACAACTGGAAGCAGCTGGGGACAACAGAATGCTCCACCACCTGTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032289-'13-17,'13-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=0.818 C2=0.849
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.6=100)
A:
PF059869=ADAM_spacer1=PD(13.7=48.5)
C2:
PF0009014=TSP_1=PU(28.1=17.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGGAACTGGGCAATCGA
R:
TTCCAGCTGCCCATTGAAAGG
Band lengths:
171-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: