HsaEX0064903 @ hg19
Exon Skipping
Gene
ENSG00000187720 | THSD4
Description
thrombospondin, type I, domain containing 4 [Source:HGNC Symbol;Acc:25835]
Coordinates
chr15:72020888-72030346:+
Coord C1 exon
chr15:72020888-72021063
Coord A exon
chr15:72023460-72023556
Coord C2 exon
chr15:72030071-72030346
Length
97 bp
Sequences
Splice sites
3' ss Seq
ACTGATTTTTGTGTCAGCAGATG
3' ss Score
6.21
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
CCCTGAGAAGTCGTTCTGGACGCTCCATCATCAATGGGAACTGGGCAATTGATCGACCAGGAAAATACGAGGGCGGAGGGACCATGTTCACCTACAAGCGTCCAAATGAGATTTCGAGCACTGCCGGAGAGTCCTTTTTGGCGGAAGGTCCCACCAACGAGATCTTGGATGTCTAC
Seq A exon
ATGATACACCAGCAGCCAAACCCAGGCGTGCACTACGAGTACGTGATCATGGGGACCAACGCCATCAGCCCCCAGGTGCCACCCCACAGGAGACCAG
Seq C2 exon
GGGAACCCTTCAATGGCCAGATGGTGACAGAAGGCAGGAGCCAGGAGGAGGGAGAACAGAAAGGGAGGAACGAGGAGAAGGAAGACTTGCGTGGGGAGGCCCCTGAGATGTTCACCTCAGAATCGGCACAGACCTTCCCAGTCAGGCATCCAGACAGATTTTCTCCCCATCGACCGGACAACTTGGTGCCACCAGCACCGCAGCCCCCACGGCGCAGCCGGGATCACAACTGGAAGCAGCTTGGGACAACAGAATGTTCCACGACCTGTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187720-'19-19,'19-18,20-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=0.788 C2=0.843
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.6=100)
A:
PF059869=ADAM_spacer1=PD(13.7=48.5)
C2:
PF0009014=TSP_1=PU(28.1=17.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCCCACCAACGAGATCTT
R:
GGAAGGTCTGTGCCGATTCTG
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)