GgaEX1058430 @ galGal4
Exon Skipping
Gene
ENSGALG00000004087 | THSD4
Description
thrombospondin, type I, domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25835]
Coordinates
chr10:6059491-6065769:+
Coord C1 exon
chr10:6059491-6059666
Coord A exon
chr10:6064535-6064631
Coord C2 exon
chr10:6065527-6065769
Length
97 bp
Sequences
Splice sites
3' ss Seq
ATGGCTATTTTTCTTTTTAGATG
3' ss Score
9.13
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CCTTGCGGAGTCGATCAGGGCGGTCCATCATCAATGGAAACTGGGCAATTGATCGGCCTGGAAGATATGAAGGTGGTGGGACAATGTTCACTTACAAACGCCCAAATGAAATCTCCAGCACTGCAGGAGAGTCCTTTTTAGCGGATGGTCCAACAAATGAAGTCCTTGATGTCTAT
Seq A exon
ATGATACATCAGCAGCCTAACCCAGGTATACATTATGAGTATATCATTCCAGGAGACAATGTCATCAGTCCTCAGTTGCTTGCTCACAGGAGGCCAG
Seq C2 exon
GGGAGCCCTTGAATGGTCAGTTAGAAATGCCTGAAAGTACAAATCACAATGAGGACGATTTGCATAGGGAGACAGACACTCTCACTGGGCAGTCAGTTGGAACGTTTCCAGTTATTCCGCCAGGAAGATTTCCTTCTCATCAGCCAGAAAACCAGGTGCCTGCTGTGCAGCTATCAAGACAAAACCGAGAATACAACTGGAAACAGATCGGAAAAACTGAGTGTACCACTACATGTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004087-'21-25,'21-24,23-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.305 A=0.394 C2=0.735
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.6=100)
A:
PF059869=ADAM_spacer1=PD(13.7=48.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATCTCCAGCACTGCAGG
R:
AACTGACTGCCCAGTGAGAGT
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]