RnoEX6036085 @ rn6
Exon Skipping
Gene
ENSRNOG00000051221 | AABR07070310.1
Description
NA
Coordinates
chr8:64844217-64855246:-
Coord C1 exon
chr8:64855071-64855246
Coord A exon
chr8:64852251-64852347
Coord C2 exon
chr8:64844217-64844492
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTTTGACTTTGTGTCCTCAGATG
3' ss Score
10.68
5' ss Seq
CGGGTAAAG
5' ss Score
6.23
Exon sequences
Seq C1 exon
CCTTGCGAAGTCGCTCTGGCCGCTCCATCATCAATGGGAACTGGGCAATCGATCGCCCCGGGAAGTACGAGGGCGGAGGGACAATGTTCACCTACAAGCGACCGAACGAGATCTCCAGCACTGCCGGGGAGTCCTTTTTGGCTGAAGGTCCCACTAATGAGATCCTGGATGTCTAT
Seq A exon
ATGATACACCAGCAGCCCAACCCAGGAGTCCACTATGAGTACGTGATCATGGGGAATAATGCCATCAGTCCACAGGTGCCACCACACAGGAGACCGG
Seq C2 exon
GAGAACCTTTCAATGGGCAGTTGGAAACAGAAGATGGCGGTCAGGAGGACAGAGAAGAGAGGGAGAAGAACCAGGAGAAGGAAGACTCACACGTCGAGGCCCCTGAAGTATTCACATCAGAATCCACGCAGACCTTCCCAGTCAGGCATCCGGAGAGATTCCCTTCCCACCGACCAGATAACTTAGTGCCTCCAGCACCACAGCACCCCAGGCGAAACCGGGACCACAACTGGAAGCAGCTGGGGACAACAGAATGCTCCACCACCTGTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051221-'6-9,'6-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTTTGGCTGAAGGTCCCA
R:
GGAAGGTCTGCGTGGATTCTG
Band lengths:
182-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]