HsaEX0064903 @ hg38
Exon Skipping
Gene
ENSG00000187720 | THSD4
Description
thrombospondin type 1 domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25835]
Coordinates
chr15:71728549-71738007:+
Coord C1 exon
chr15:71728549-71728724
Coord A exon
chr15:71731121-71731217
Coord C2 exon
chr15:71737732-71738007
Length
97 bp
Sequences
Splice sites
3' ss Seq
ACTGATTTTTGTGTCAGCAGATG
3' ss Score
6.21
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
CCCTGAGAAGTCGTTCTGGACGCTCCATCATCAATGGGAACTGGGCAATTGATCGACCAGGAAAATACGAGGGCGGAGGGACCATGTTCACCTACAAGCGTCCAAATGAGATTTCGAGCACTGCCGGAGAGTCCTTTTTGGCGGAAGGTCCCACCAACGAGATCTTGGATGTCTAC
Seq A exon
ATGATACACCAGCAGCCAAACCCAGGCGTGCACTACGAGTACGTGATCATGGGGACCAACGCCATCAGCCCCCAGGTGCCACCCCACAGGAGACCAG
Seq C2 exon
GGGAACCCTTCAATGGCCAGATGGTGACAGAAGGCAGGAGCCAGGAGGAGGGAGAACAGAAAGGGAGGAACGAGGAGAAGGAAGACTTGCGTGGGGAGGCCCCTGAGATGTTCACCTCAGAATCGGCACAGACCTTCCCAGTCAGGCATCCAGACAGATTTTCTCCCCATCGACCGGACAACTTGGTGCCACCAGCACCGCAGCCCCCACGGCGCAGCCGGGATCACAACTGGAAGCAGCTTGGGACAACAGAATGTTCCACGACCTGTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187720_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=0.788 C2=0.849
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(49.6=100)
A:
PF059869=ADAM_spacer1=PD(13.7=48.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCCCACCAACGAGATCTT
R:
GGAAGGTCTGTGCCGATTCTG
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development