BtaEX6053666 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58253554-58258595:+
Coord C1 exon
chr10:58253554-58253641
Coord A exon
chr10:58257071-58257169
Coord C2 exon
chr10:58258441-58258595
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTATTTGCCTCTGCCTACAGCCA
3' ss Score
9.08
5' ss Seq
TTGGTAATG
5' ss Score
4.83
Exon sequences
Seq C1 exon
GATCTTGAAGAAGAGTTAGACATGAAGGAAAGAGTGATTAAAAAGTTACAAGATCAAGTGAAGACTCTTACCAAGACAATTGAAAAAG
Seq A exon
CCAATGACGTGCACCTGTCCTCAGGACCCAAGGAGTACCTTGGAATGCTGGAATACAAGAGAGAAGATGAGGCCAAGCTCATTCAAAACCTCATTCTTG
Seq C2 exon
ACCTGAAGCCCCGCGGTGTGGTGGTGAACATGATCCCCGGGCTGCCGGCTCATATCCTGTTCATGTGTGTACGCTACGCAGACTCTCTAAATGACGCCGACATGCTCAAGTCCCTCATGAACAGCACCATTAATGGCATCAAGCAGGTGGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763-'45-52,'45-50,46-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(13.4=100)
A:
PF131661=AAA_13=PD(6.5=41.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGATCAAGTGAAGACTCTTACCA
R:
ATGGTGCTGTTCATGAGGGAC
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]