MmuEX0030546 @ mm9
Exon Skipping
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75138656-75141887:+
Coord C1 exon
chr9:75138656-75138743
Coord A exon
chr9:75139961-75140059
Coord C2 exon
chr9:75141733-75141887
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCGTTTGCCTCTGTCTGCAGCCA
3' ss Score
9.79
5' ss Seq
TTGGTAGTC
5' ss Score
-1.16
Exon sequences
Seq C1 exon
GATCTCGAGGAAGAGTTAGACATGAAGGACAGAATGATTAGAAGGCTACAAGATCAAGTCAAGACTCTGACCAAGACGACTGAGAAAG
Seq A exon
CCAACCATGTGCACCTGCCCTCGGGATCCAGGGAGTACCTGGGGATGCTGGAATACAAGAAAGAAGATGAGGGGAAGCTCATTCAAAACCTCATTCTTG
Seq C2 exon
ACCTGAAGCCCCGAGGTGTGGTGGTGAACATGATCCCAGGGCTGCCAGCTCACATCCTGTTCATGTGCGTGCGATACGCGGACTCCCTAAACGACGCCAACATGCTCAAATCCCTCATGAACAGTGCTATTAACGGCATCAAGCATGTGGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590_MULTIEX2-20/27=19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.176 C2=0.000
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(15.3=100)
A:
PF131661=AAA_13=PD(2.6=14.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGACCAAGACGACTGAGA
R:
ACCACATGCTTGATGCCGTTA
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: