RnoEX0057441 @ rn6
Exon Skipping
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82233583-82236810:+
Coord C1 exon
chr8:82233583-82233670
Coord A exon
chr8:82235154-82235252
Coord C2 exon
chr8:82236656-82236810
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCGTTTACCTCTGTCTGCAGCCA
3' ss Score
8.95
5' ss Seq
TTGGTAGTA
5' ss Score
-1.33
Exon sequences
Seq C1 exon
GATCTTGAGGAAGAGTTAGACATGAAGGACAGGATGATTAGGAAGCTACAGGATCAAGTCAAGACTCTGACCAGGACGATTGAAAAAG
Seq A exon
CCAACAGTGTGCCCCTGCCCTCGGGATCCAGGGAGTACCTGGGAATGCTGGAGTACAAGAAAGAAGACGAGACCAAGCTCATTCAAAACCTCATTCTTG
Seq C2 exon
ACCTGAAGCCCCGAGGCGTGGTGGTGAACATGATCCCTGGGCTGCCAGCTCACATCCTGTTCATGTGTGTGCGGTATGCAGACTCCCTGAACGATGCCAACATGCTCAAATCCCTCATGAACAGTGCTATTAACGGCATCAAGCATGTGGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.132 C2=0.000
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(15.4=100)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000011768fB9262
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGACTCTGACCAGGACGA
R:
ACCACATGCTTGATGCCGTTA
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]