GgaEX1038151 @ galGal4
Exon Skipping
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8357072-8359092:+
Coord C1 exon
chr10:8357072-8357159
Coord A exon
chr10:8357864-8357962
Coord C2 exon
chr10:8358938-8359092
Length
99 bp
Sequences
Splice sites
3' ss Seq
TACTGCTTTCTGTTTGACAGACG
3' ss Score
7.26
5' ss Seq
TCGGTATTA
5' ss Score
3.12
Exon sequences
Seq C1 exon
GACCTGGAAGAAGAACTAGACATGAAAGACAGAATCATAAAGAAATTGGAGGATCAGATCAAAACTCTTACCAAGACTACTGAAAAAG
Seq A exon
ACGGTGAAGTTCATGTGTCAGCTTTGCCCAAAGAGTACATTGGAATGATGGAGTACAAAAGAGAAGATGAAGAAAGGATTGTCCAAAATCTGATCCTCG
Seq C2 exon
ATTTAAAGCCACGTGGAGTTGTAGTCAATATGATACCCGGCCTTCCAGCTCACATCCTATTCATGTGTGTGAGGTATGCAGATTATCTGAACGATGCTGACATGCTGAAATCTTTCATAAATGTAACCATTGATGGTATCAAACAAGTTGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAAGAAGAACTAGACATGA
R:
TCTGCATACCTCACACACATGA
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]