MmuEX0030546 @ mm10
Exon Skipping
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75290849-75294080:+
Coord C1 exon
chr9:75290849-75290936
Coord A exon
chr9:75292154-75292252
Coord C2 exon
chr9:75293926-75294080
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCGTTTGCCTCTGTCTGCAGCCA
3' ss Score
9.79
5' ss Seq
TTGGTAGTC
5' ss Score
-1.16
Exon sequences
Seq C1 exon
GATCTCGAGGAAGAGTTAGACATGAAGGACAGAATGATTAGAAGGCTACAAGATCAAGTCAAGACTCTGACCAAGACGACTGAGAAAG
Seq A exon
CCAACCATGTGCACCTGCCCTCGGGATCCAGGGAGTACCTGGGGATGCTGGAATACAAGAAAGAAGATGAGGGGAAGCTCATTCAAAACCTCATTCTTG
Seq C2 exon
ACCTGAAGCCCCGAGGTGTGGTGGTGAACATGATCCCAGGGCTGCCAGCTCACATCCTGTTCATGTGCGTGCGATACGCGGACTCCCTAAACGACGCCAACATGCTCAAATCCCTCATGAACAGTGCTATTAACGGCATCAAGCATGTGGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590-'60-52,'60-51,61-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.176 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGACCAAGACGACTGAGA
R:
ACCACATGCTTGATGCCGTTA
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types