HsaEX0041221 @ hg38
Exon Skipping
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52211730-52214690:-
Coord C1 exon
chr15:52214603-52214690
Coord A exon
chr15:52213188-52213286
Coord C2 exon
chr15:52211730-52211884
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGCCTCTGTCTACAGCCA
3' ss Score
9.32
5' ss Seq
TTGGTAGTG
5' ss Score
-1.33
Exon sequences
Seq C1 exon
GATCTTGAAGAAGAATTAGACATGAAAGACAGAGTGATTAAAAAGCTACAAGATCAAGTCAAGACACTAAGCAAGACAATTGGAAAAG
Seq A exon
CCAATGATGTGCACTCGTCCTCAGGACCCAAGGAGTACCTTGGAATGCTGCAATACAAGAGAGAAGACGAGGCCAAGCTCATTCAGAACCTCATTCTTG
Seq C2 exon
ACTTGAAGCCCCGTGGCGTGGTGGTGAACATGATCCCCGGGCTGCCGGCTCATATCCTGTTCATGTGTGTGCGCTACGCAGACTCTCTGAATGATGCCAACATGCTGAAGTCCCTCATGAACAGCACCATTAATGGCATCAAGCAGGTGGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833_MULTIEX4-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACTAAGCAAGACAATTGGA
R:
AACCACCTGCTTGATGCCATT
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development