DreEX6100630 @ danRer10
Exon Skipping
Gene
ENSDARG00000104235 | myo5c
Description
myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
Coordinates
chr25:4689594-4690277:+
Coord C1 exon
chr25:4689594-4689678
Coord A exon
chr25:4689748-4689846
Coord C2 exon
chr25:4690123-4690277
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATGTTTGATTTCCTCATCAGCCA
3' ss Score
4.55
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
GACTTCGAGGAGCAGCTAGACATGAAGGACAGATTAATAAAGCGACTTCAAGACCAAATCAAAGCTCTTCAAACACACGCTGCAG
Seq A exon
CCAATCAGAAAGCAGCTCCAGCCGTACCCAAAGAGTACCTGGGCATGCTGGAGTACAAGAAGGAGGATGAAGGCAGGCTGATCCGGATACTCATCCTGG
Seq C2 exon
AGCTGAAGCCTCGCGGTGTGGGTGTGAATATGATCCCTGGTTTGGCTGCTCATCTGCTCTTCATGTGTGTGAGACACGCAGATTATCTGAATGACGGAAACAAACTCAAGTGCCTCATGAACAACATTATAACAGCCGTCAAAGAGGTCATCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104235-'35-42,'35-41,36-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
PF086146=ATG16=FE(18.5=100)
A:
PF086146=ATG16=PD(11.3=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCAAACACACGCTGCAG
R:
CGTGATGACCTCTTTGACGGC
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]