BtaEX6054746 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018255 | ACTN1
Description
Bos taurus actinin, alpha 1 (ACTN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035351]
Coordinates
chr10:81052396-81062641:-
Coord C1 exon
chr10:81062522-81062641
Coord A exon
chr10:81054314-81054400
Coord C2 exon
chr10:81052396-81052483
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTGCTGTTTCTGTAGAAA
3' ss Score
7.75
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTGAACGTTTGGCCAAGCCCGAGAGAGGCAAAATGAGGGTGCACAAGATCTCCAATGTCAACAAGGCCCTGGACTTCATAGCCAGCAAGGGGGTCAAGCTGGTGTCCATAGGAGCTGAAG
Seq A exon
AAATCGTGGATGGGAATGTGAAAATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATCCAGGACATCTCTGTGGAAG
Seq C2 exon
AGACTTCAGCGAAGGAAGGGCTTCTCTTGTGGTGTCAGAGAAAGACAGCCCCTTACAAGAATGTCAACATCCAGAACTTCCACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018255-'18-6,'18-5,19-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(39.2=100)
A:
PF0030726=CH=PD(20.6=70.0)
C2:
PF0030726=CH=PU(24.0=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCGAGAGAGGCAAAATG
R:
TGACATTCTTGTAAGGGGCTGT
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]