MmuEX6081841 @ mm10
Exon Skipping
Gene
ENSMUSG00000015143 | Actn1
Description
actinin, alpha 1 [Source:MGI Symbol;Acc:MGI:2137706]
Coordinates
chr12:80196926-80202315:-
Coord C1 exon
chr12:80202215-80202315
Coord A exon
chr12:80198981-80199067
Coord C2 exon
chr12:80196926-80197013
Length
87 bp
Sequences
Splice sites
3' ss Seq
CCTGCCACTGTTTTCTGTAGAAA
3' ss Score
8.23
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGGGAGAGGGGGACCCAAGCAGGACTTTTAAATTTTGAGATTTAGAGGAAGTTTGATGTTTGGGTGCCAAGAGCTTGGGGCCATCTCTACAGTTCAGATCT
Seq A exon
AAATTGTGGATGGGAATGTGAAGATGACCCTGGGCATGATCTGGACCATCATTCTCCGCTTTGCCATCCAGGACATCTCCGTGGAAG
Seq C2 exon
AGACTTCAGCTAAAGAAGGGTTACTCCTGTGGTGTCAGAGGAAGACAGCCCCATATAAAAATGTCAACATCCAAAACTTCCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015143-'42-7,'42-5,43-7
Average complexity
ME(5_43-6_44[100=98])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0030726=CH=PD(20.6=70.0)
C2:
PF0030726=CH=PU(24.0=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCCAAGCAGGACTTTTA
R:
TGTGGAAGTTTTGGATGTTGACA
Band lengths:
176-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types