RnoEX0006325 @ rn6
Exon Skipping
Gene
ENSRNOG00000056756 | Actn1
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103405598-103413906:-
Coord C1 exon
chr6:103413787-103413906
Coord A exon
chr6:103407558-103407644
Coord C2 exon
chr6:103405598-103405685
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGCATGTTTCTGTAGAAA
3' ss Score
8.55
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GTGAGCGTTTGGCCAAGCCAGAGAGAGGCAAGATGCGAGTGCACAAGATCTCCAACGTCAACAAGGCCCTGGATTTCATAGCCAGCAAAGGGGTCAAGCTGGTGTCCATTGGAGCTGAAG
Seq A exon
AAATTGTGGACGGGAATGTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTTCGTTTTGCCATCCAAGACATCTCTGTGGAAG
Seq C2 exon
AGACATCAGCTAAAGAAGGGTTGCTCCTGTGGTGTCAGAGGAAGACAGCCCCATATAAAAATGTCAACATCCAAAACTTCCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756-'13-6,'13-5,15-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(39.2=100)
A:
PF0030726=CH=PD(20.6=70.0)
C2:
PF0030726=CH=PU(24.0=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGTGCACAAGATCTCCAA
R:
TGTGGAAGTTTTGGATGTTGACA
Band lengths:
170-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]